WI67_03865 protein (Burkholderia cepacia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

WI67_03865

Uncharacterized protein (129 aa)

Predicted Functional Partners:

DM42_1018

0.925

WI67_03860

0.800

WI67_02750

0.685

WI67_12060

0.593

rnpA

0.532

lolB

0.531

WI67_05365

0.530

WL94_15085

0.486

WI67_05030

0.476

WI67_02600

0.473

Your Current Organism:

Burkholderia cepacia

NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DM42_1018	WI67_02750	DM42_1018	DM42_1242	DUF883 domain-containing protein	annotation not available	0.728
DM42_1018	WI67_03860	DM42_1018	DM42_1020	DUF883 domain-containing protein	Uncharacterized protein	0.531
DM42_1018	WI67_03865	DM42_1018	DM42_1019	DUF883 domain-containing protein	Uncharacterized protein	0.925
DM42_1018	WI67_12060	DM42_1018	DM42_2844	DUF883 domain-containing protein	Uncharacterized protein	0.659
DM42_1018	lolB	DM42_1018	DM42_2270	DUF883 domain-containing protein	Outer-membrane lipoprotein LolB; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein	0.437
DM42_1018	rnpA	DM42_1018	DM42_1788	DUF883 domain-containing protein	Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme	0.415
WI67_02600	WI67_03860	DM42_1272	DM42_1020	Uncharacterized protein	Uncharacterized protein	0.684
WI67_02600	WI67_03865	DM42_1272	DM42_1019	Uncharacterized protein	Uncharacterized protein	0.473
WI67_02600	WI67_05030	DM42_1272	DM42_786	Uncharacterized protein	Uncharacterized protein	0.774
WI67_02600	WI67_05365	DM42_1272	DM42_719	Uncharacterized protein	annotation not available	0.736
WI67_02600	WI67_12060	DM42_1272	DM42_2844	Uncharacterized protein	Uncharacterized protein	0.602
WI67_02600	lolB	DM42_1272	DM42_2270	Uncharacterized protein	Outer-membrane lipoprotein LolB; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein	0.557
WI67_02600	rnpA	DM42_1272	DM42_1788	Uncharacterized protein	Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme	0.746
WI67_02750	DM42_1018	DM42_1242	DM42_1018	annotation not available	DUF883 domain-containing protein	0.728
WI67_02750	WI67_03865	DM42_1242	DM42_1019	annotation not available	Uncharacterized protein	0.685
WI67_03860	DM42_1018	DM42_1020	DM42_1018	Uncharacterized protein	DUF883 domain-containing protein	0.531
WI67_03860	WI67_02600	DM42_1020	DM42_1272	Uncharacterized protein	Uncharacterized protein	0.684
WI67_03860	WI67_03865	DM42_1020	DM42_1019	Uncharacterized protein	Uncharacterized protein	0.800
WI67_03860	WI67_05030	DM42_1020	DM42_786	Uncharacterized protein	Uncharacterized protein	0.559
WI67_03860	rnpA	DM42_1020	DM42_1788	Uncharacterized protein	Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme	0.478

page 1 of 4

Network

Neighborhood

Textmining

Cooccurrence

Experiments

Coexpression

Databases

Fusion

© STRING Consortium 2020

Credits

Access

Info

About