node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DM42_102 | DM42_3523 | DM42_102 | DM42_3523 | Lipooligosaccharide transport system permease protein; nodJ: ABC-2 type transporter, NodJ family protein | HEQRo_perm_3TM: amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein | 0.554 |
DM42_102 | DM42_6433 | DM42_102 | DM42_6433 | Lipooligosaccharide transport system permease protein; nodJ: ABC-2 type transporter, NodJ family protein | HEQRo_perm_3TM: amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein | 0.554 |
DM42_102 | DM42_6882 | DM42_102 | DM42_6882 | Lipooligosaccharide transport system permease protein; nodJ: ABC-2 type transporter, NodJ family protein | annotation not available | 0.542 |
DM42_102 | lptB_3 | DM42_102 | DM42_2280 | Lipooligosaccharide transport system permease protein; nodJ: ABC-2 type transporter, NodJ family protein | annotation not available | 0.566 |
DM42_102 | nodI | DM42_102 | DM42_101 | Lipooligosaccharide transport system permease protein; nodJ: ABC-2 type transporter, NodJ family protein | Lipooligosaccharide transport system atp-binding protein; Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modified beta-1,4- linked N-acetylglucosamine oligosaccharide. This subunit is responsible for energy coupling to the transport system | 0.996 |
DM42_102 | rpsA | DM42_102 | DM42_780 | Lipooligosaccharide transport system permease protein; nodJ: ABC-2 type transporter, NodJ family protein | Small subunit ribosomal protein s1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence | 0.544 |
DM42_102 | rpsE | DM42_102 | DM42_1456 | Lipooligosaccharide transport system permease protein; nodJ: ABC-2 type transporter, NodJ family protein | Small subunit ribosomal protein s5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body | 0.550 |
DM42_102 | rpsL | DM42_102 | DM42_1478 | Lipooligosaccharide transport system permease protein; nodJ: ABC-2 type transporter, NodJ family protein | Small subunit ribosomal protein s12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit | 0.561 |
DM42_102 | rpsN | DM42_102 | DM42_1460 | Lipooligosaccharide transport system permease protein; nodJ: ABC-2 type transporter, NodJ family protein | Small subunit ribosomal protein s14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site | 0.553 |
DM42_102 | rpsR | DM42_102 | DM42_3229 | Lipooligosaccharide transport system permease protein; nodJ: ABC-2 type transporter, NodJ family protein | Small subunit ribosomal protein s18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit | 0.595 |
DM42_3523 | DM42_102 | DM42_3523 | DM42_102 | HEQRo_perm_3TM: amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein | Lipooligosaccharide transport system permease protein; nodJ: ABC-2 type transporter, NodJ family protein | 0.554 |
DM42_3523 | DM42_6433 | DM42_3523 | DM42_6433 | HEQRo_perm_3TM: amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein | HEQRo_perm_3TM: amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein | 0.637 |
DM42_3523 | DM42_6882 | DM42_3523 | DM42_6882 | HEQRo_perm_3TM: amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein | annotation not available | 0.590 |
DM42_3523 | lptB_3 | DM42_3523 | DM42_2280 | HEQRo_perm_3TM: amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein | annotation not available | 0.852 |
DM42_6433 | DM42_102 | DM42_6433 | DM42_102 | HEQRo_perm_3TM: amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein | Lipooligosaccharide transport system permease protein; nodJ: ABC-2 type transporter, NodJ family protein | 0.554 |
DM42_6433 | DM42_3523 | DM42_6433 | DM42_3523 | HEQRo_perm_3TM: amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein | HEQRo_perm_3TM: amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein | 0.637 |
DM42_6433 | DM42_6882 | DM42_6433 | DM42_6882 | HEQRo_perm_3TM: amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein | annotation not available | 0.590 |
DM42_6433 | lptB_3 | DM42_6433 | DM42_2280 | HEQRo_perm_3TM: amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein | annotation not available | 0.852 |
DM42_6882 | DM42_102 | DM42_6882 | DM42_102 | annotation not available | Lipooligosaccharide transport system permease protein; nodJ: ABC-2 type transporter, NodJ family protein | 0.542 |
DM42_6882 | DM42_3523 | DM42_6882 | DM42_3523 | annotation not available | HEQRo_perm_3TM: amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein | 0.590 |