STRINGSTRING
ybgC protein (Burkholderia cepacia) - STRING interaction network
"ybgC" - thio_ybgC: tol-pal system-associated acyl-CoA thioesterase in Burkholderia cepacia
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybgCthio_ybgC- tol-pal system-associated acyl-CoA thioesterase (158 aa)    
Predicted Functional Partners:
tolQ
tolQ- protein TolQ (225 aa)
   
  0.977
tolB
Protein TolB; Involved in the TonB-independent uptake of proteins (431 aa)
 
   
  0.932
tolR
tolR- protein TolR (149 aa)
 
   
  0.916
tolA
tolA_full- protein TolA (351 aa)
         
  0.744
dtd
D-aminoacyl-tRNA deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl- tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA-based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality; Belongs to the DTD family (152 aa)
           
  0.677
WL94_21455
Pal_lipo- peptidoglycan-associated lipoprotein; Belongs to the ompA family (169 aa)
 
     
  0.675
WI67_15070
cydB- cytochrome d ubiquinol oxidase, subunit II (378 aa)
            0.674
ygbF
Cell division coordinator CpoB; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division (249 aa)
   
   
  0.648
guaA
GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP (539 aa)
   
   
  0.613
ydfG
annotation not available (248 aa)
         
  0.590
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
Server load: low (11%) [HD]