STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tolQtolQ: protein TolQ (225 aa)    
Predicted Functional Partners:
tolR
tolR: protein TolR
 
 
 0.996
tolB
Protein TolB; Involved in the TonB-independent uptake of proteins
 
 
 0.987
ybgC
thio_ybgC: tol-pal system-associated acyl-CoA thioesterase
  
 0.977
tolA
tolA_full: protein TolA
 
 
 0.969
WL94_21455
Pal_lipo: peptidoglycan-associated lipoprotein; Belongs to the ompA family
 
 
 0.922
WI67_11955
annotation not available
 
 
 0.892
DM42_4529
annotation not available
 
 
 0.885
WL94_34810
annotation not available
 
 
 0.883
ygbF
Cell division coordinator CpoB; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
 
   
 0.841
WI67_24585
Pal_lipo: peptidoglycan-associated lipoprotein; Belongs to the ompA family
 
 
 0.841
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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