STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hmpANitric oxide dioxygenase; Belongs to the globin family (402 aa)    
Predicted Functional Partners:
ahpF
ahpF: alkyl hydroperoxide reductase subunit F
      
 0.804
DM42_5220
annotation not available
   
 0.788
nirB
Nitrite reductase [nad(p)h], large subunit; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
 
   
 0.738
DM42_7206
Nitrate reductase / nitrite oxidoreductase, alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
  
  
 0.711
yjbI
annotation not available
 
  
 0.693
DM42_3486
annotation not available
 
  
 0.644
DM42_3251
annotation not available
  
  
 0.615
DM42_6272
Sulfite reductase (nadph) flavoprotein alpha-component; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily
  
  
 0.607
DM42_1103
Cob(i)alamin adenosyltransferase, putative; Belongs to the Cob(I)alamin adenosyltransferase family
       0.604
DM42_3252
Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor; Rrf2_super: Rrf2 family protein
 
  
 0.568
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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