STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nudJBelongs to the Nudix hydrolase family. NudJ subfamily (169 aa)    
Predicted Functional Partners:
trmU
Trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34
  
    0.897
DM42_2544
Isocitrate dehydrogenase, nadp-dependent; Belongs to the monomeric-type IDH family
      0.782
rluE
Pseudouridine synthase family protein; Belongs to the pseudouridine synthase RsuA family
 
  
 0.740
DM42_1233
annotation not available
 
  
 0.599
gltB_2
Hypothetical protein; Belongs to the glutamate synthase family
       0.546
DM42_1147
Xaa-pro aminopeptidase; Belongs to the peptidase M24B family
 
     0.546
DM42_1142
H+-translocating nad(p) transhydrogenase subunit alpha; Alanine dehydrogenase/PNT, C-terminal domain protein
       0.500
DM42_1140
H+-translocating nad(p) transhydrogenase subunit beta; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
       0.478
DM42_1141
H+-translocating nad(p) transhydrogenase subunit alpha; Conserved hypothetical protein
       0.467
DM42_2996
annotation not available
 
     0.457
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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