STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nudJannotation not available (169 aa)    
Predicted Functional Partners:
trmU
tRNA-specific 2-thiouridylase MnmA; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34
  
  
 0.903
WL94_04035
Monomer_idh: isocitrate dehydrogenase, NADP-dependent
      0.782
WL94_04020
annotation not available
 
  
 0.768
WI67_02795
annotation not available
 
    0.583
WL94_22015
Conserved region in glutamate synthase family protein; Belongs to the glutamate synthase family
       0.546
WL94_22025
Aminopeptidase P, N-terminal domain protein; Belongs to the peptidase M24B family
 
     0.546
DM42_1142
Alanine dehydrogenase/PNT, C-terminal domain protein
       0.500
DM42_1140
annotation not available
       0.478
DM42_1141
Conserved hypothetical protein
       0.467
WL94_39620
annotation not available
 
     0.457
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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