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DM42_1169 protein (Burkholderia cepacia) - STRING interaction network
"DM42_1169" - Autotrans_barl: outer membrane autotransporter barrel domain protein in Burkholderia cepacia
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_1169Autotrans_barl- outer membrane autotransporter barrel domain protein (1767 aa)    
Predicted Functional Partners:
DM42_6816
annotation not available (4237 aa)
 
 
 
  0.921
DM42_5825
annotation not available (2365 aa)
 
 
 
  0.894
DM42_393
Conserved hypothetical protein (580 aa)
 
 
 
  0.874
DM42_5853
T1SS_VCA0849- type I secretion C-terminal target domain protein (2134 aa)
 
 
 
  0.845
DM42_7390
annotation not available (4558 aa)
 
   
  0.841
DM42_5957
Conserved hypothetical protein (3799 aa)
 
   
  0.825
DM42_118
annotation not available (247 aa)
   
 
      0.792
WL94_05235
annotation not available (2016 aa)
   
   
  0.790
DM42_1824
Conserved hypothetical protein (301 aa)
   
          0.781
DM42_1642
Conserved hypothetical protein (182 aa)
   
          0.781
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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