WL94_34750 protein (Burkholderia cepacia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

WL94_34750

annotation not available (473 aa)

Predicted Functional Partners:

DM42_6411

0.757

WL94_19835

0.638

WI67_15965

0.637

WL94_11855

0.562

WL94_34755

0.558

DM42_2924

0.548

DM42_2015

0.547

WL94_25230

0.534

WL94_19830

0.488

WL94_39060

0.461

Your Current Organism:

Burkholderia cepacia

NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DM42_2015	DM42_6411	DM42_2015	DM42_6411	annotation not available	annotation not available	0.524
DM42_2015	WI67_15965	DM42_2015	DM42_2016	annotation not available	annotation not available	0.925
DM42_2015	WL94_19830	DM42_2015	DM42_2922	annotation not available	annotation not available	0.582
DM42_2015	WL94_19835	DM42_2015	DM42_2923	annotation not available	annotation not available	0.726
DM42_2015	WL94_34750	DM42_2015	DM42_1177	annotation not available	annotation not available	0.547
DM42_2015	WL94_39060	DM42_2015	DM42_5906	annotation not available	annotation not available	0.468
DM42_2924	DM42_6411	DM42_2924	DM42_6411	annotation not available	annotation not available	0.541
DM42_2924	WI67_15965	DM42_2924	DM42_2016	annotation not available	annotation not available	0.731
DM42_2924	WL94_19830	DM42_2924	DM42_2922	annotation not available	annotation not available	0.879
DM42_2924	WL94_19835	DM42_2924	DM42_2923	annotation not available	annotation not available	0.928
DM42_2924	WL94_34750	DM42_2924	DM42_1177	annotation not available	annotation not available	0.548
DM42_2924	WL94_39060	DM42_2924	DM42_5906	annotation not available	annotation not available	0.463
DM42_6411	DM42_2015	DM42_6411	DM42_2015	annotation not available	annotation not available	0.524
DM42_6411	DM42_2924	DM42_6411	DM42_2924	annotation not available	annotation not available	0.541
DM42_6411	WI67_15965	DM42_6411	DM42_2016	annotation not available	annotation not available	0.606
DM42_6411	WL94_11855	DM42_6411	DM42_3646	annotation not available	annotation not available	0.460
DM42_6411	WL94_19830	DM42_6411	DM42_2922	annotation not available	annotation not available	0.441
DM42_6411	WL94_19835	DM42_6411	DM42_2923	annotation not available	annotation not available	0.604
DM42_6411	WL94_25230	DM42_6411	DM42_5599	annotation not available	soxA: sarcosine oxidase, alpha subunit; Belongs to the GcvT family	0.534
DM42_6411	WL94_34750	DM42_6411	DM42_1177	annotation not available	annotation not available	0.757

page 1 of 4

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About