STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WL94_34750annotation not available (473 aa)    
Predicted Functional Partners:
DM42_6411
annotation not available
  
     0.757
WL94_19835
annotation not available
 
  
 0.638
WI67_15965
annotation not available
 
  
 0.637
WL94_11855
annotation not available
 
   
 0.562
WL94_34755
annotation not available
 
     0.558
DM42_2924
annotation not available
 
   
 0.548
DM42_2015
annotation not available
 
   
 0.547
WL94_25230
soxA: sarcosine oxidase, alpha subunit; Belongs to the GcvT family
  
 
 0.534
WL94_19830
annotation not available
 
  
 0.488
WL94_39060
annotation not available
 
  
 0.461
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
Server load: low (12%) [HD]