WL94_34900 protein (Burkholderia cepacia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

WL94_34900

Polyamine aminopropyltransferase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine; Belongs to the spermidine/spermine synthase family (285 aa)

Predicted Functional Partners:

speD

0.999

mtnN

0.918

DM42_3981

0.917

WL94_17670

0.917

WL94_04555

0.917

DM42_6605

0.917

WI67_16830

0.916

DM42_2015

0.900

WI67_27375

0.900

WL94_39020

0.867

Your Current Organism:

Burkholderia cepacia

NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DM42_2015	DM42_3981	DM42_2015	DM42_3981	annotation not available	orn/Lys/Arg decarboxylase, C-terminal domain protein	0.900
DM42_2015	DM42_6605	DM42_2015	DM42_6605	annotation not available	annotation not available	0.900
DM42_2015	WI67_16830	DM42_2015	DM42_1799	annotation not available	annotation not available	0.900
DM42_2015	WL94_04555	DM42_2015	DM42_6138	annotation not available	Agmatinase: agmatinase; Belongs to the arginase family	0.900
DM42_2015	WL94_17670	DM42_2015	DM42_473	annotation not available	Agmatinase: agmatinase; Belongs to the arginase family	0.900
DM42_2015	WL94_34900	DM42_2015	DM42_1206	annotation not available	Polyamine aminopropyltransferase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine; Belongs to the spermidine/spermine synthase family	0.900
DM42_2015	WL94_39020	DM42_2015	DM42_5914	annotation not available	Polyamine aminopropyltransferase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine	0.900
DM42_3981	DM42_2015	DM42_3981	DM42_2015	orn/Lys/Arg decarboxylase, C-terminal domain protein	annotation not available	0.900
DM42_3981	DM42_6605	DM42_3981	DM42_6605	orn/Lys/Arg decarboxylase, C-terminal domain protein	annotation not available	0.909
DM42_3981	WI67_16830	DM42_3981	DM42_1799	orn/Lys/Arg decarboxylase, C-terminal domain protein	annotation not available	0.905
DM42_3981	WL94_04555	DM42_3981	DM42_6138	orn/Lys/Arg decarboxylase, C-terminal domain protein	Agmatinase: agmatinase; Belongs to the arginase family	0.909
DM42_3981	WL94_17670	DM42_3981	DM42_473	orn/Lys/Arg decarboxylase, C-terminal domain protein	Agmatinase: agmatinase; Belongs to the arginase family	0.909
DM42_3981	WL94_34900	DM42_3981	DM42_1206	orn/Lys/Arg decarboxylase, C-terminal domain protein	Polyamine aminopropyltransferase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine; Belongs to the spermidine/spermine synthase family	0.917
DM42_3981	WL94_39020	DM42_3981	DM42_5914	orn/Lys/Arg decarboxylase, C-terminal domain protein	Polyamine aminopropyltransferase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine	0.906
DM42_6605	DM42_2015	DM42_6605	DM42_2015	annotation not available	annotation not available	0.900
DM42_6605	DM42_3981	DM42_6605	DM42_3981	annotation not available	orn/Lys/Arg decarboxylase, C-terminal domain protein	0.909
DM42_6605	WI67_16830	DM42_6605	DM42_1799	annotation not available	annotation not available	0.901
DM42_6605	WL94_04555	DM42_6605	DM42_6138	annotation not available	Agmatinase: agmatinase; Belongs to the arginase family	0.859
DM42_6605	WL94_17670	DM42_6605	DM42_473	annotation not available	Agmatinase: agmatinase; Belongs to the arginase family	0.857
DM42_6605	WL94_34900	DM42_6605	DM42_1206	annotation not available	Polyamine aminopropyltransferase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine; Belongs to the spermidine/spermine synthase family	0.917

page 1 of 4

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About