WI67_02865 protein (Burkholderia cepacia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

WI67_02865

annotation not available (338 aa)

Predicted Functional Partners:

araG

0.986

WL94_00840

0.960

WL94_34990

0.945

WI67_32130

0.883

WI67_32120

0.809

xylG

0.807

WL94_28775

0.806

WI67_07650

0.803

WL94_35420

0.803

DM42_4320

0.802

Your Current Organism:

Burkholderia cepacia

NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DM42_4320	WI67_02865	DM42_4320	DM42_1219	annotation not available	annotation not available	0.802
DM42_4320	WI67_32120	DM42_4320	DM42_5192	annotation not available	annotation not available	0.802
WI67_02865	DM42_4320	DM42_1219	DM42_4320	annotation not available	annotation not available	0.802
WI67_02865	WI67_07650	DM42_1219	DM42_153	annotation not available	Ribose import ATP-binding protein RbsA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family	0.803
WI67_02865	WI67_32120	DM42_1219	DM42_5192	annotation not available	annotation not available	0.809
WI67_02865	WI67_32130	DM42_1219	DM42_5190	annotation not available	annotation not available	0.883
WI67_02865	WL94_00840	DM42_1219	DM42_5191	annotation not available	Arabinose import ATP-binding protein AraG; Part of the ABC transporter complex AraFGH involved in arabinose import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Arabinose importer (TC 3.A.1.2.2) family	0.960
WI67_02865	WL94_28775	DM42_1219	DM42_90	annotation not available	ccmA: heme ABC exporter, ATP-binding protein CcmA	0.806
WI67_02865	WL94_34990	DM42_1219	DM42_1221	annotation not available	annotation not available	0.945
WI67_02865	WL94_35420	DM42_1219	DM42_5709	annotation not available	Putative ribose/galactose/methyl galactoside import ATP-binding protein; Part of an ABC transporter complex involved in carbohydrate import. Could be involved in ribose, galactose and/or methyl galactoside import. Responsible for energy coupling to the transport system	0.803
WI67_02865	araG	DM42_1219	DM42_1220	annotation not available	Arabinose import ATP-binding protein AraG; Part of the ABC transporter complex AraFGH involved in arabinose import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Arabinose importer (TC 3.A.1.2.2) family	0.986
WI67_02865	xylG	DM42_1219	DM42_6852	annotation not available	Xylose import ATP-binding protein XylG; Part of the ABC transporter complex XylFGH involved in xylose import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Xylose importer (TC 3.A.1.2.4) family	0.807
WI67_07650	WI67_02865	DM42_153	DM42_1219	Ribose import ATP-binding protein RbsA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family	annotation not available	0.803
WI67_07650	WI67_32120	DM42_153	DM42_5192	Ribose import ATP-binding protein RbsA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family	annotation not available	0.800
WI67_32120	DM42_4320	DM42_5192	DM42_4320	annotation not available	annotation not available	0.802
WI67_32120	WI67_02865	DM42_5192	DM42_1219	annotation not available	annotation not available	0.809
WI67_32120	WI67_07650	DM42_5192	DM42_153	annotation not available	Ribose import ATP-binding protein RbsA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family	0.800
WI67_32120	WI67_32130	DM42_5192	DM42_5190	annotation not available	annotation not available	0.957
WI67_32120	WL94_00840	DM42_5192	DM42_5191	annotation not available	Arabinose import ATP-binding protein AraG; Part of the ABC transporter complex AraFGH involved in arabinose import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Arabinose importer (TC 3.A.1.2.2) family	0.987
WI67_32120	WL94_28775	DM42_5192	DM42_90	annotation not available	ccmA: heme ABC exporter, ATP-binding protein CcmA	0.803

page 1 of 3

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About