DM42_1263 protein (Burkholderia cepacia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DM42_1263

annotation not available (401 aa)

Predicted Functional Partners:

WL94_35195

0.987

outO

0.981

gspE

0.925

pilQ

0.911

coaE

0.796

gspD

0.768

gspG

0.729

WI67_02655

0.700

DM42_2977

0.663

zapD

0.654

Your Current Organism:

Burkholderia cepacia

NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DM42_1263	DM42_2977	DM42_1263	DM42_2977	annotation not available	comEC_Rec2- DNA internalization-related competence protein ComEC/Rec2	0.663
DM42_1263	WI67_02655	DM42_1263	DM42_1261	annotation not available	annotation not available	0.700
DM42_1263	WL94_35195	DM42_1263	DM42_1262	annotation not available	annotation not available	0.987
DM42_1263	coaE	DM42_1263	DM42_1265	annotation not available	Dephospho-CoA kinase; Catalyzes the phosphorylation of the 3’-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family	0.796
DM42_1263	gspD	DM42_1263	DM42_1717	annotation not available	type_II_gspD- type II secretion system protein D	0.768
DM42_1263	gspE	DM42_1263	DM42_1718	annotation not available	type_II_gspE- type II secretion system protein E	0.925
DM42_1263	gspG	DM42_1263	DM42_1721	annotation not available	typeII_sec_gspG- type II secretion system protein G	0.729
DM42_1263	outO	DM42_1263	DM42_1264	annotation not available	Type 4 prepilin-like proteins leader peptide-processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue	0.981
DM42_1263	pilQ	DM42_1263	DM42_1430	annotation not available	IV_pilus_PilQ- type IV pilus secretin PilQ family protein	0.911
DM42_1263	zapD	DM42_1263	DM42_1266	annotation not available	Cell division protein ZapD; Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity	0.654
DM42_2977	DM42_1263	DM42_2977	DM42_1263	comEC_Rec2- DNA internalization-related competence protein ComEC/Rec2	annotation not available	0.663
DM42_2977	WL94_35195	DM42_2977	DM42_1262	comEC_Rec2- DNA internalization-related competence protein ComEC/Rec2	annotation not available	0.716
DM42_2977	gspE	DM42_2977	DM42_1718	comEC_Rec2- DNA internalization-related competence protein ComEC/Rec2	type_II_gspE- type II secretion system protein E	0.676
DM42_2977	gspG	DM42_2977	DM42_1721	comEC_Rec2- DNA internalization-related competence protein ComEC/Rec2	typeII_sec_gspG- type II secretion system protein G	0.448
DM42_2977	outO	DM42_2977	DM42_1264	comEC_Rec2- DNA internalization-related competence protein ComEC/Rec2	Type 4 prepilin-like proteins leader peptide-processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue	0.673
DM42_2977	pilQ	DM42_2977	DM42_1430	comEC_Rec2- DNA internalization-related competence protein ComEC/Rec2	IV_pilus_PilQ- type IV pilus secretin PilQ family protein	0.643
WI67_02655	DM42_1263	DM42_1261	DM42_1263	annotation not available	annotation not available	0.700
WI67_02655	WL94_35195	DM42_1261	DM42_1262	annotation not available	annotation not available	0.594
WI67_02655	coaE	DM42_1261	DM42_1265	annotation not available	Dephospho-CoA kinase; Catalyzes the phosphorylation of the 3’-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family	0.591
WI67_02655	outO	DM42_1261	DM42_1264	annotation not available	Type 4 prepilin-like proteins leader peptide-processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue	0.647

page 1 of 4

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2019

Credits

Access

Info

About