Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DM42_1262 | DM42_1263 | DM42_1262 | DM42_1263 | annotation not available | annotation not available | 0.993 |
DM42_1262 | DM42_1724 | DM42_1262 | DM42_1724 | annotation not available | General secretion pathway protein GspJ; IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain protein | 0.696 |
DM42_1262 | DM42_2977 | DM42_1262 | DM42_2977 | annotation not available | comEC_Rec2: DNA internalization-related competence protein ComEC/Rec2 | 0.742 |
DM42_1262 | DM42_5945 | DM42_1262 | DM42_5945 | annotation not available | type_III_yscC: type III secretion outer membrane pore, YscC/HrcC family | 0.865 |
DM42_1262 | coaE | DM42_1262 | DM42_1265 | annotation not available | Dephospho-coa kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A | 0.739 |
DM42_1262 | gspD | DM42_1262 | DM42_1717 | annotation not available | General secretion pathway protein d; type_II_gspD: type II secretion system protein D | 0.961 |
DM42_1262 | gspG | DM42_1262 | DM42_1721 | annotation not available | General secretion pathway protein g; typeII_sec_gspG: type II secretion system protein G | 0.923 |
DM42_1262 | outO | DM42_1262 | DM42_1264 | annotation not available | Type 4 prepilin-like proteins leader peptide-processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue | 0.958 |
DM42_1262 | pilQ | DM42_1262 | DM42_1430 | annotation not available | IV_pilus_PilQ: type IV pilus secretin PilQ family protein | 0.890 |
DM42_1263 | DM42_1262 | DM42_1263 | DM42_1262 | annotation not available | annotation not available | 0.993 |
DM42_1263 | DM42_1724 | DM42_1263 | DM42_1724 | annotation not available | General secretion pathway protein GspJ; IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain protein | 0.712 |
DM42_1263 | DM42_2977 | DM42_1263 | DM42_2977 | annotation not available | comEC_Rec2: DNA internalization-related competence protein ComEC/Rec2 | 0.702 |
DM42_1263 | DM42_5945 | DM42_1263 | DM42_5945 | annotation not available | type_III_yscC: type III secretion outer membrane pore, YscC/HrcC family | 0.716 |
DM42_1263 | coaE | DM42_1263 | DM42_1265 | annotation not available | Dephospho-coa kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A | 0.799 |
DM42_1263 | gspD | DM42_1263 | DM42_1717 | annotation not available | General secretion pathway protein d; type_II_gspD: type II secretion system protein D | 0.881 |
DM42_1263 | gspE | DM42_1263 | DM42_1718 | annotation not available | Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins | 0.957 |
DM42_1263 | gspG | DM42_1263 | DM42_1721 | annotation not available | General secretion pathway protein g; typeII_sec_gspG: type II secretion system protein G | 0.857 |
DM42_1263 | outO | DM42_1263 | DM42_1264 | annotation not available | Type 4 prepilin-like proteins leader peptide-processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue | 0.984 |
DM42_1263 | pilQ | DM42_1263 | DM42_1430 | annotation not available | IV_pilus_PilQ: type IV pilus secretin PilQ family protein | 0.900 |
DM42_1724 | DM42_1262 | DM42_1724 | DM42_1262 | General secretion pathway protein GspJ; IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain protein | annotation not available | 0.696 |
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