STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_1263annotation not available (401 aa)    
Predicted Functional Partners:
DM42_1262
annotation not available
 
 0.993
outO
Type 4 prepilin-like proteins leader peptide-processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue
 
  
 0.984
gspE
Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
 
 0.957
pilQ
IV_pilus_PilQ: type IV pilus secretin PilQ family protein
 
 
 0.900
gspD
General secretion pathway protein d; type_II_gspD: type II secretion system protein D
 
 
 0.881
gspG
General secretion pathway protein g; typeII_sec_gspG: type II secretion system protein G
 
 
 0.857
coaE
Dephospho-coa kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
     
 0.799
DM42_5945
type_III_yscC: type III secretion outer membrane pore, YscC/HrcC family
 
 
 0.716
DM42_1724
General secretion pathway protein GspJ; IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain protein
  
 
 0.712
DM42_2977
comEC_Rec2: DNA internalization-related competence protein ComEC/Rec2
 
   
 0.702
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.