Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DM42_1262 | DM42_1263 | DM42_1262 | DM42_1263 | annotation not available | annotation not available | 0.993 |
DM42_1262 | DM42_2426 | DM42_1262 | DM42_2426 | annotation not available | Type iv pilus assembly protein pila; General secretion pathway protein GspH; IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain protein | 0.508 |
DM42_1262 | coaE | DM42_1262 | DM42_1265 | annotation not available | Dephospho-coa kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A | 0.739 |
DM42_1262 | outO | DM42_1262 | DM42_1264 | annotation not available | Type 4 prepilin-like proteins leader peptide-processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue | 0.958 |
DM42_1262 | yacG | DM42_1262 | DM42_1267 | annotation not available | Uncharacterized protein; Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C- terminal domain of GyrB, which probably disrupts DNA binding by the gyrase | 0.481 |
DM42_1262 | zapD | DM42_1262 | DM42_1266 | annotation not available | Cell division protein zapd; Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity | 0.530 |
DM42_1263 | DM42_1262 | DM42_1263 | DM42_1262 | annotation not available | annotation not available | 0.993 |
DM42_1263 | DM42_2426 | DM42_1263 | DM42_2426 | annotation not available | Type iv pilus assembly protein pila; General secretion pathway protein GspH; IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain protein | 0.582 |
DM42_1263 | coaE | DM42_1263 | DM42_1265 | annotation not available | Dephospho-coa kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A | 0.799 |
DM42_1263 | outO | DM42_1263 | DM42_1264 | annotation not available | Type 4 prepilin-like proteins leader peptide-processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue | 0.984 |
DM42_1263 | yacG | DM42_1263 | DM42_1267 | annotation not available | Uncharacterized protein; Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C- terminal domain of GyrB, which probably disrupts DNA binding by the gyrase | 0.626 |
DM42_1263 | zapD | DM42_1263 | DM42_1266 | annotation not available | Cell division protein zapd; Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity | 0.654 |
DM42_2426 | DM42_1262 | DM42_2426 | DM42_1262 | Type iv pilus assembly protein pila; General secretion pathway protein GspH; IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain protein | annotation not available | 0.508 |
DM42_2426 | DM42_1263 | DM42_2426 | DM42_1263 | Type iv pilus assembly protein pila; General secretion pathway protein GspH; IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain protein | annotation not available | 0.582 |
DM42_2426 | outO | DM42_2426 | DM42_1264 | Type iv pilus assembly protein pila; General secretion pathway protein GspH; IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain protein | Type 4 prepilin-like proteins leader peptide-processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue | 0.528 |
DM42_2426 | yacG | DM42_2426 | DM42_1267 | Type iv pilus assembly protein pila; General secretion pathway protein GspH; IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain protein | Uncharacterized protein; Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C- terminal domain of GyrB, which probably disrupts DNA binding by the gyrase | 0.432 |
coaE | DM42_1262 | DM42_1265 | DM42_1262 | Dephospho-coa kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A | annotation not available | 0.739 |
coaE | DM42_1263 | DM42_1265 | DM42_1263 | Dephospho-coa kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A | annotation not available | 0.799 |
coaE | outO | DM42_1265 | DM42_1264 | Dephospho-coa kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A | Type 4 prepilin-like proteins leader peptide-processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue | 0.906 |
coaE | yacG | DM42_1265 | DM42_1267 | Dephospho-coa kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A | Uncharacterized protein; Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C- terminal domain of GyrB, which probably disrupts DNA binding by the gyrase | 0.764 |
page 1 of 3