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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
paaDpaaD: phenylacetic acid degradation protein PaaD (150 aa)    
Predicted Functional Partners:
WL94_02780
annotation not available
 
 
 0.989
WL94_02790
annotation not available
 
 
 0.988
WI67_01385
annotation not available
 
  
 0.986
paaJ
PA_CoA_Oxy4: phenylacetate-CoA oxygenase, PaaJ subunit
 
 
 0.986
WL94_02800
annotation not available
 
  
 0.979
paaB
Enoyl-CoA hydratase; paaB1: phenylacetate degradation putative enoyl-CoA hydratase PaaB; Belongs to the enoyl-CoA hydratase/isomerase family
 
 
 0.970
WL94_16460
Phenylacetate-coenzyme A ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
 
  
 0.957
amiE
annotation not available
    
 0.908
WL94_03065
annotation not available
     
  0.900
DM42_3543
annotation not available
     
  0.900
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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