STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpeBelongs to the ribulose-phosphate 3-epimerase family (228 aa)    
Predicted Functional Partners:
tkt
Belongs to the transketolase family
 0.998
Gph
Phosphoglycolate phosphatase, bacterial; Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stress
 
  
 0.986
rpiA
Ribose 5-phosphate isomerase a; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate
  
 0.986
gnd
6-phosphogluconate dehydrogenase; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
  
 0.984
DM42_5987
Hypothetical protein; Belongs to the FGGY kinase family
 
 0.947
DM42_2464
Hypothetical protein; FGGY family of carbohydrate kinase, N-terminal domain protein
 
 0.942
xylB
xylB: xylulokinase
 
 0.942
XylB
xylB: xylulokinase
 
 0.942
pgk
Phosphoglycerate kinase family protein; Belongs to the phosphoglycerate kinase family
 
 
 0.909
DM42_4539
L-ribulose-5-phosphate 4-epimerase; Class II Aldolase and Adducin N-terminal domain protein
    
 0.909
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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