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STRINGSTRING
rpe protein (Burkholderia cepacia) - STRING interaction network
"rpe" - Rpe: ribulose-phosphate 3-epimerase in Burkholderia cepacia
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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[Homology]
Score
rpeRpe- ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family (228 aa)    
Predicted Functional Partners:
tkt
Transketolase; Tktlase_bact- transketolase; Belongs to the transketolase family (664 aa)
  0.993
WL94_16440
PGP_bact- phosphoglycolate phosphatase, bacterial (254 aa)
 
   
  0.985
rpiA
Ribose-5-phosphate isomerase A; Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate (231 aa)
   
  0.968
gnd
6-phosphogluconate dehydrogenase, decarboxylating; Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH; Belongs to the 6-phosphogluconate dehydrogenase family (470 aa)
   
  0.954
WL94_38730
Uncharacterized protein; FGGY family of carbohydrate kinase, N-terminal domain protein (515 aa)
 
  0.933
DM42_5059
xylB- xylulokinase (488 aa)
 
  0.927
WL94_08845
xylB- xylulokinase (493 aa)
 
  0.927
WL94_08745
FGGY family of carbohydrate kinase, N-terminal domain protein (488 aa)
 
  0.927
tpiA
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family (251 aa)
 
   
  0.910
pgk
annotation not available (398 aa)
 
 
  0.873
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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