STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_1358annotation not available (316 aa)    
Predicted Functional Partners:
DM42_1357
Type vi secretion system protein impm; Type VI secretion protein
 
  
 0.981
DM42_1356
annotation not available
 
  
 0.975
DM42_1355
annotation not available
 
    0.886
nuoI
Nadh-quinone oxidoreductase, chain i family protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
    
 0.876
DM42_1370
IV_VI_DotU: type IV/VI secretion system , DotU family domain protein
 
  
 0.771
DM42_1367
annotation not available
  
   
 0.768
DM42_1359
Type VI secretion protein ImpA; impA-related N-terminal family protein
 
  
 0.760
DM42_355
annotation not available
 
  
 0.760
DM42_1364
VI_effect_Hcp1: type VI secretion system effector, Hcp1 family protein
 
   
 0.757
DM42_1363
annotation not available
 
   
 0.752
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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