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DM42_1364 protein (Burkholderia cepacia) - STRING interaction network
"DM42_1364" - VI_effect_Hcp1: type VI secretion system effector, Hcp1 family protein in Burkholderia cepacia
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_1364VI_effect_Hcp1- type VI secretion system effector, Hcp1 family protein (167 aa)    
Predicted Functional Partners:
WI67_02135
EvpB family type VI secretion protein (496 aa)
 
 
  0.987
DM42_1366
Type VI secretion protein (171 aa)
 
 
  0.977
WI67_02145
annotation not available (161 aa)
 
   
  0.962
WL94_16170
Type VI secretion protein (366 aa)
 
     
  0.925
WI67_02165
Type VI secretion protein ImpA; impA-related N-terminal family protein (373 aa)
 
     
  0.910
DM42_1367
annotation not available (208 aa)
 
   
  0.909
WL94_16165
Type VI secretion protein (611 aa)
 
   
  0.906
clpV
VI_ClpV1- type VI secretion ATPase, ClpV1 family (889 aa)
 
     
  0.890
WL94_16135
annotation not available (199 aa)
 
   
  0.884
WI67_02115
Type VI secretion protein (448 aa)
 
   
  0.884
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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