STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_1370IV_VI_DotU: type IV/VI secretion system , DotU family domain protein (260 aa)    
Predicted Functional Partners:
DM42_1369
Type vi secretion system protein impj; Type VI secretion protein
 
  
 0.986
DM42_1368
annotation not available
 
  
 0.944
DM42_1359
Type VI secretion protein ImpA; impA-related N-terminal family protein
 
  
 0.922
DM42_1356
annotation not available
 
 
 0.915
DM42_1363
annotation not available
 
  
 0.902
DM42_1366
Type vi secretion system protein impb; Type VI secretion protein
 
  
 0.893
DM42_1365
Type vi secretion system protein impc; EvpB family type VI secretion protein
 
   
 0.891
DM42_1355
annotation not available
 
  
 0.880
DM42_1361
Type vi secretion system protein imph; Type VI secretion protein
 
  
 0.880
DM42_1364
VI_effect_Hcp1: type VI secretion system effector, Hcp1 family protein
 
  
 0.880
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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