STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WL94_16125IV_VI_DotU: type IV/VI secretion system , DotU family domain protein (260 aa)    
Predicted Functional Partners:
WI67_02115
Type VI secretion protein
 
  
 0.984
WL94_16135
annotation not available
 
  
 0.940
WI67_02165
Type VI secretion protein ImpA; impA-related N-terminal family protein
 
  
 0.913
WI67_02145
annotation not available
 
  
 0.897
DM42_1366
Type VI secretion protein
 
  
 0.892
WI67_02135
EvpB family type VI secretion protein
 
   
 0.883
DM42_1364
VI_effect_Hcp1: type VI secretion system effector, Hcp1 family protein
 
  
 0.882
WL94_16200
annotation not available
 
  
 0.880
WI67_02180
annotation not available
 
  
 0.879
WL94_16170
Type VI secretion protein
 
  
 0.872
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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