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DM42_1416 protein (Burkholderia cepacia) - STRING interaction network
"DM42_1416" - 2_5_ligase: 2'-5' RNA ligase in Burkholderia cepacia
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_14162_5_ligase- 2’-5’ RNA ligase (188 aa)    
Predicted Functional Partners:
agcS
Sodium-alanine symporter; agcS- amino acid carrier family protein (496 aa)
              0.856
WI67_04090
DUF1571 domain-containing protein (210 aa)
   
          0.636
DM42_1433
Conserved hypothetical protein (307 aa)
   
          0.592
DM42_164
annotation not available (94 aa)
   
          0.587
DM42_4199
annotation not available (541 aa)
 
          0.567
DM42_5248
Conserved hypothetical protein (471 aa)
   
          0.542
DM42_1431
Conserved hypothetical protein (288 aa)
   
          0.514
bcsE
cellulose_bcsE- cellulose biosynthesis protein BcsE (659 aa)
   
          0.512
VL15_00700
annotation not available (438 aa)
   
          0.476
WL94_10910
Uncharacterized protein (150 aa)
   
          0.476
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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