STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_143annotation not available (238 aa)    
Predicted Functional Partners:
DM42_6285
annotation not available
  
   
 0.704
Oxidoreductase
annotation not available
       0.582
DM42_1223
annotation not available
 
   
 0.574
DM42_3603
annotation not available
  
   
 0.572
DM42_1224
annotation not available
 
   
 0.528
dgoD
D-galactonate dehydratase; Mandelate racemase / muconate lactonizing enzyme, C-terminal domain protein
   
 0.481
yiaJ_3
annotation not available
  
 
 
 0.468
DM42_1810
phnR_burk: phosphonate utilization associated transcriptional regulator
  
  
 0.453
DM42_5184
annotation not available
  
  
 0.431
DM42_4918
annotation not available
  
 
 
 0.426
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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