Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DM42_1262 | DM42_1263 | DM42_1262 | DM42_1263 | annotation not available | annotation not available | 0.993 |
DM42_1262 | DM42_1431 | DM42_1262 | DM42_1431 | annotation not available | Conserved hypothetical protein | 0.578 |
DM42_1262 | DM42_1433 | DM42_1262 | DM42_1433 | annotation not available | Conserved hypothetical protein | 0.578 |
DM42_1262 | DM42_2426 | DM42_1262 | DM42_2426 | annotation not available | Type iv pilus assembly protein pila; General secretion pathway protein GspH; IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain protein | 0.508 |
DM42_1262 | gspF | DM42_1262 | DM42_1719 | annotation not available | General secretion pathway protein f; gspF: type II secretion system protein F | 0.956 |
DM42_1262 | outO | DM42_1262 | DM42_1264 | annotation not available | Type 4 prepilin-like proteins leader peptide-processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue | 0.958 |
DM42_1262 | pilQ | DM42_1262 | DM42_1430 | annotation not available | IV_pilus_PilQ: type IV pilus secretin PilQ family protein | 0.890 |
DM42_1263 | DM42_1262 | DM42_1263 | DM42_1262 | annotation not available | annotation not available | 0.993 |
DM42_1263 | DM42_1431 | DM42_1263 | DM42_1431 | annotation not available | Conserved hypothetical protein | 0.585 |
DM42_1263 | DM42_1433 | DM42_1263 | DM42_1433 | annotation not available | Conserved hypothetical protein | 0.572 |
DM42_1263 | DM42_2426 | DM42_1263 | DM42_2426 | annotation not available | Type iv pilus assembly protein pila; General secretion pathway protein GspH; IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain protein | 0.582 |
DM42_1263 | gspE | DM42_1263 | DM42_1718 | annotation not available | Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins | 0.957 |
DM42_1263 | outO | DM42_1263 | DM42_1264 | annotation not available | Type 4 prepilin-like proteins leader peptide-processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue | 0.984 |
DM42_1263 | pilQ | DM42_1263 | DM42_1430 | annotation not available | IV_pilus_PilQ: type IV pilus secretin PilQ family protein | 0.900 |
DM42_1431 | DM42_1262 | DM42_1431 | DM42_1262 | Conserved hypothetical protein | annotation not available | 0.578 |
DM42_1431 | DM42_1263 | DM42_1431 | DM42_1263 | Conserved hypothetical protein | annotation not available | 0.585 |
DM42_1431 | DM42_1432 | DM42_1431 | DM42_1432 | Conserved hypothetical protein | annotation not available | 0.845 |
DM42_1431 | DM42_1433 | DM42_1431 | DM42_1433 | Conserved hypothetical protein | Conserved hypothetical protein | 0.994 |
DM42_1431 | aroB | DM42_1431 | DM42_1428 | Conserved hypothetical protein | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ) | 0.655 |
DM42_1431 | gspE | DM42_1431 | DM42_1718 | Conserved hypothetical protein | Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins | 0.578 |
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