STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Penicillin-binding PBP_1a_fam: penicillin-binding , 1A family protein (795 aa)    
Predicted Functional Partners:
mrdA
Catalyzes cross-linking of the peptidoglycan cell wall.
  
 
 0.733
mltG
Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation.
  
 
 0.669
mrdB
Peptidoglycan polymerase that is essential for cell wall elongation
  
 
 
 0.663
murC
Cell wall formation
  
 
 
 0.608
lepB
Belongs to the peptidase S26 family.
  
 
   0.608
DM42_3279
annotation not available
 
   
 0.606
murA
Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
 
   
 0.605
ftsI
Catalyzes cross-linking of the peptidoglycan cell wall at the division septum
  
 
 
 0.604
pilQ
IV_pilus_PilQ: type IV pilus secretin PilQ family protein
     
 0.600
nlpD_3
annotation not available
 
   
 0.597
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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