Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| rplM | rplQ | DM42_1163 | DM42_1446 | Large subunit ribosomal protein l13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly | Large subunit ribosomal protein l17; L17: ribosomal protein L17 | 0.999 |
| rplM | rplU | DM42_1163 | DM42_1258 | Large subunit ribosomal protein l13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly | Large subunit ribosomal protein l21; This protein binds to 23S rRNA in the presence of protein L20 | 0.999 |
| rplM | rpmA | DM42_1163 | DM42_1257 | Large subunit ribosomal protein l13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly | Large subunit ribosomal protein l27; Belongs to the bacterial ribosomal protein bL27 family | 0.999 |
| rplM | rpmJ | DM42_1163 | DM42_1451 | Large subunit ribosomal protein l13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly | Large subunit ribosomal protein l36; Belongs to the bacterial ribosomal protein bL36 family | 0.999 |
| rplM | rpoA | DM42_1163 | DM42_1447 | Large subunit ribosomal protein l13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly | Dna-directed rna polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates | 0.984 |
| rplM | rpsD | DM42_1163 | DM42_1448 | Large subunit ribosomal protein l13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly | Small subunit ribosomal protein s4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit | 0.999 |
| rplM | rpsI | DM42_1163 | DM42_1162 | Large subunit ribosomal protein l13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly | Small subunit ribosomal protein s9; Belongs to the universal ribosomal protein uS9 family | 0.999 |
| rplM | rpsK | DM42_1163 | DM42_1449 | Large subunit ribosomal protein l13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly | Small subunit ribosomal protein s11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome | 0.999 |
| rplM | rpsM | DM42_1163 | DM42_1450 | Large subunit ribosomal protein l13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly | Small subunit ribosomal protein s13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites | 0.999 |
| rplM | secY | DM42_1163 | DM42_1453 | Large subunit ribosomal protein l13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly | Preprotein translocase, secy subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently | 0.988 |
| rplQ | rplM | DM42_1446 | DM42_1163 | Large subunit ribosomal protein l17; L17: ribosomal protein L17 | Large subunit ribosomal protein l13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly | 0.999 |
| rplQ | rplU | DM42_1446 | DM42_1258 | Large subunit ribosomal protein l17; L17: ribosomal protein L17 | Large subunit ribosomal protein l21; This protein binds to 23S rRNA in the presence of protein L20 | 0.999 |
| rplQ | rpmA | DM42_1446 | DM42_1257 | Large subunit ribosomal protein l17; L17: ribosomal protein L17 | Large subunit ribosomal protein l27; Belongs to the bacterial ribosomal protein bL27 family | 0.999 |
| rplQ | rpmJ | DM42_1446 | DM42_1451 | Large subunit ribosomal protein l17; L17: ribosomal protein L17 | Large subunit ribosomal protein l36; Belongs to the bacterial ribosomal protein bL36 family | 0.999 |
| rplQ | rpoA | DM42_1446 | DM42_1447 | Large subunit ribosomal protein l17; L17: ribosomal protein L17 | Dna-directed rna polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates | 0.999 |
| rplQ | rpsD | DM42_1446 | DM42_1448 | Large subunit ribosomal protein l17; L17: ribosomal protein L17 | Small subunit ribosomal protein s4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit | 0.999 |
| rplQ | rpsI | DM42_1446 | DM42_1162 | Large subunit ribosomal protein l17; L17: ribosomal protein L17 | Small subunit ribosomal protein s9; Belongs to the universal ribosomal protein uS9 family | 0.999 |
| rplQ | rpsK | DM42_1446 | DM42_1449 | Large subunit ribosomal protein l17; L17: ribosomal protein L17 | Small subunit ribosomal protein s11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome | 0.999 |
| rplQ | rpsM | DM42_1446 | DM42_1450 | Large subunit ribosomal protein l17; L17: ribosomal protein L17 | Small subunit ribosomal protein s13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites | 0.999 |
| rplQ | secY | DM42_1446 | DM42_1453 | Large subunit ribosomal protein l17; L17: ribosomal protein L17 | Preprotein translocase, secy subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently | 0.973 |
page 1 of 6
