Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| DM42_1208 | DM42_714 | DM42_1208 | DM42_714 | 16S rRNA (uracil1498-N3)-methyltransferase; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit | 23S rRNA pseudouridine955/2504/2580 synthase; Responsible for synthesis of pseudouridine from uracil | 0.436 |
| DM42_1208 | rlmB | DM42_1208 | DM42_146 | 16S rRNA (uracil1498-N3)-methyltransferase; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit | Rna 2'-o ribose methyltransferase substrate binding family protein; Specifically methylates the ribose of guanosine 2251 in 23S rRNA | 0.700 |
| DM42_1208 | rsmH | DM42_1208 | DM42_1288 | 16S rRNA (uracil1498-N3)-methyltransferase; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit | 16S rRNA (cytosine(1402)-N(4))-methyltransferase; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA | 0.799 |
| DM42_1208 | trmD | DM42_1208 | DM42_756 | 16S rRNA (uracil1498-N3)-methyltransferase; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit | Trna (guanine(37)-n(1))-methyltransferase; Specifically methylates guanosine-37 in various tRNAs | 0.744 |
| DM42_3184 | cgtA | DM42_3184 | DM42_1256 | annotation not available | Obg family gtpase cgta; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control | 0.504 |
| DM42_3184 | rlmB | DM42_3184 | DM42_146 | annotation not available | Rna 2'-o ribose methyltransferase substrate binding family protein; Specifically methylates the ribose of guanosine 2251 in 23S rRNA | 0.818 |
| DM42_3184 | rnr | DM42_3184 | DM42_147 | annotation not available | 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs | 0.531 |
| DM42_714 | DM42_1208 | DM42_714 | DM42_1208 | 23S rRNA pseudouridine955/2504/2580 synthase; Responsible for synthesis of pseudouridine from uracil | 16S rRNA (uracil1498-N3)-methyltransferase; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit | 0.436 |
| DM42_714 | cgtA | DM42_714 | DM42_1256 | 23S rRNA pseudouridine955/2504/2580 synthase; Responsible for synthesis of pseudouridine from uracil | Obg family gtpase cgta; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control | 0.803 |
| DM42_714 | rlmB | DM42_714 | DM42_146 | 23S rRNA pseudouridine955/2504/2580 synthase; Responsible for synthesis of pseudouridine from uracil | Rna 2'-o ribose methyltransferase substrate binding family protein; Specifically methylates the ribose of guanosine 2251 in 23S rRNA | 0.680 |
| DM42_714 | rnr | DM42_714 | DM42_147 | 23S rRNA pseudouridine955/2504/2580 synthase; Responsible for synthesis of pseudouridine from uracil | 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs | 0.463 |
| DM42_714 | rplC | DM42_714 | DM42_1473 | 23S rRNA pseudouridine955/2504/2580 synthase; Responsible for synthesis of pseudouridine from uracil | Large subunit ribosomal protein l3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit | 0.794 |
| DM42_714 | rplO | DM42_714 | DM42_1454 | 23S rRNA pseudouridine955/2504/2580 synthase; Responsible for synthesis of pseudouridine from uracil | Large subunit ribosomal protein l15; Binds to the 23S rRNA | 0.781 |
| DM42_714 | rsmH | DM42_714 | DM42_1288 | 23S rRNA pseudouridine955/2504/2580 synthase; Responsible for synthesis of pseudouridine from uracil | 16S rRNA (cytosine(1402)-N(4))-methyltransferase; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA | 0.687 |
| DM42_714 | trmD | DM42_714 | DM42_756 | 23S rRNA pseudouridine955/2504/2580 synthase; Responsible for synthesis of pseudouridine from uracil | Trna (guanine(37)-n(1))-methyltransferase; Specifically methylates guanosine-37 in various tRNAs | 0.618 |
| cgtA | DM42_3184 | DM42_1256 | DM42_3184 | Obg family gtpase cgta; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control | annotation not available | 0.504 |
| cgtA | DM42_714 | DM42_1256 | DM42_714 | Obg family gtpase cgta; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control | 23S rRNA pseudouridine955/2504/2580 synthase; Responsible for synthesis of pseudouridine from uracil | 0.803 |
| cgtA | rlmB | DM42_1256 | DM42_146 | Obg family gtpase cgta; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control | Rna 2'-o ribose methyltransferase substrate binding family protein; Specifically methylates the ribose of guanosine 2251 in 23S rRNA | 0.684 |
| cgtA | rplC | DM42_1256 | DM42_1473 | Obg family gtpase cgta; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control | Large subunit ribosomal protein l3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit | 0.851 |
| cgtA | rplO | DM42_1256 | DM42_1454 | Obg family gtpase cgta; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control | Large subunit ribosomal protein l15; Binds to the 23S rRNA | 0.839 |
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