STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WI67_08435Porin; OMP85_target: outer membrane insertion C-terminal signal domain protein (374 aa)    
Predicted Functional Partners:
WL94_29245
annotation not available
 
     0.806
DM42_3599
annotation not available
  
     0.702
WI67_18995
annotation not available
  
     0.678
WL94_01560
annotation not available
  
     0.674
WL94_29270
annotation not available
 
    0.656
WI67_15500
Uncharacterized protein
  
     0.606
DM42_5064
Conserved hypothetical protein
  
     0.604
WI67_10010
annotation not available
  
     0.597
DM42_393
Conserved hypothetical protein
  
 
 
 0.590
DM42_5043
annotation not available
  
     0.584
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
Server load: low (10%) [HD]