STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
paaJRing-1,2-phenylacetyl-CoA epoxidase subunit PaaD; PA_CoA_Oxy4: phenylacetate-CoA oxygenase, PaaJ subunit (184 aa)    
Predicted Functional Partners:
paaI
annotation not available
 
 0.998
DM42_1500
annotation not available
 
 
 0.996
paaK
annotation not available
 
 
 0.994
paaA
annotation not available
 
 
 0.993
paaD
paaD: phenylacetic acid degradation protein PaaD
 
 
 0.988
paaB
Phenylacetate degradation putative enoyl-coa hydratase paab; Belongs to the enoyl-CoA hydratase/isomerase family
 
 
 0.941
paaK_3
Phenylacetate-coa ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
 
 
 0.941
paaF
Phenylacetate-coa ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
 
 
 0.941
kstR2_2
annotation not available
 
   
 0.804
DM42_2075
annotation not available
 
 
 0.722
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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