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WL94_03000 protein (Burkholderia cepacia) - STRING interaction network
"WL94_03000" - UPF0102 protein WL94_03000 in Burkholderia cepacia
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WL94_03000UPF0102 protein WL94_03000; Belongs to the UPF0102 family (142 aa)    
Predicted Functional Partners:
WL94_02995
annotation not available (194 aa)
        0.917
rsmI
Ribosomal RNA small subunit methyltransferase I; Catalyzes the 2’-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA (295 aa)
   
        0.787
WL94_02990
annotation not available (266 aa)
              0.686
WL94_13700
annotation not available (528 aa)
 
        0.632
yeaZ
tRNA threonylcarbamoyladenosine biosynthesis protein TsaB; T6A_YeaZ- tRNA threonylcarbamoyl adenosine modification protein YeaZ (252 aa)
 
        0.572
DM42_2219
annotation not available (265 aa)
 
        0.571
WL94_34910
Ribosomal RNA small subunit methyltransferase E; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit (255 aa)
 
        0.533
ph
annotation not available (120 aa)
              0.531
argA
N-Ac-Glu-synth- amino-acid N-acetyltransferase; Belongs to the acetyltransferase family. ArgA subfamily (459 aa)
              0.497
DM42_2977
comEC_Rec2- DNA internalization-related competence protein ComEC/Rec2 (826 aa)
 
        0.487
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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