STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_155annotation not available (314 aa)    
Predicted Functional Partners:
rbsC_3
Belongs to the binding-protein-dependent transport system permease family
  
  0.983
rbsA_1
Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system.
 
 0.972
DM42_5985
Belongs to the binding-protein-dependent transport system permease family
 0.955
rbsC_9
Belongs to the binding-protein-dependent transport system permease family
 0.934
DM42_5709
Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system.
 
 0.927
DM42_5710
Belongs to the binding-protein-dependent transport system permease family
  
  0.924
DM42_5984
Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system.
 
 0.922
DM42_90
ccmA: heme ABC exporter, ATP-binding protein CcmA
 
 0.920
DM42_274
Belongs to the binding-protein-dependent transport system permease family
 0.761
DM42_7001
Belongs to the binding-protein-dependent transport system permease family
 0.729
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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