STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_1585Ligand-gated channel protein; tonB-siderophor: TonB-dependent siderophore receptor family protein (707 aa)    
Predicted Functional Partners:
DM42_1584
annotation not available
 
  
 0.746
DM42_5340
Uncharacterized protein
  
     0.588
DM42_5765
Non-ribosomal peptide synthetase; AA-adenyl-dom: amino acid adenylation domain protein
  
  
 0.567
DM42_4531
tonB_Cterm: TonB family C-terminal domain protein
 
 
 0.479
DM42_3484
annotation not available
 
  
 0.467
DM42_339
annotation not available
 
 
 0.466
DM42_4426
annotation not available
  
     0.455
DM42_6182
annotation not available
  
     0.448
DM42_4357
annotation not available
  
     0.432
DM42_5771
annotation not available
 
  
 0.425
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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