STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_1588annotation not available (502 aa)    
Predicted Functional Partners:
flgK
flgK_ends: flagellar hook-associated protein FlgK
 
  
 0.992
DM42_1587
Bacterial flagellin C-terminal helical region family protein
 
 
 0.976
fliS
fliS: flagellar protein FliS
 
 
 0.971
cheA
annotation not available
 
  
 0.955
flgL
flagell_flgL: flagellar hook-associated protein 3
 
 
 0.955
flgJ
flagell_FlgJ: flagellar rod assembly protein/muramidase FlgJ
 
  
 0.936
fliM
fliM_switch: flagellar motor switch protein FliM
 
  
 0.920
DM42_7319
annotation not available
  
  
 0.919
fliA
Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes
 
  
 0.912
flgG
Belongs to the flagella basal body rod proteins family.
 
  
 0.909
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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