DM42_1657 protein (Burkholderia cepacia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DM42_1657

Lysine/arginine/ornithine transport system substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family (262 aa)

Predicted Functional Partners:

hisQ

0.963

DM42_4327

0.963

hisQ_6

0.963

DM42_6453

0.963

hisM

0.958

DM42_4326

0.958

DM42_546

0.958

DM42_6454

0.958

DM42_4325

0.950

DM42_6455

0.950

Your Current Organism:

Burkholderia cepacia

NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DM42_1657	DM42_4325	DM42_1657	DM42_4325	Lysine/arginine/ornithine transport system substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family	annotation not available	0.950
DM42_1657	DM42_4326	DM42_1657	DM42_4326	Lysine/arginine/ornithine transport system substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family	HEQRo_perm_3TM: amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein	0.958
DM42_1657	DM42_4327	DM42_1657	DM42_4327	Lysine/arginine/ornithine transport system substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family	HEQRo_perm_3TM: amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein	0.963
DM42_1657	DM42_546	DM42_1657	DM42_546	Lysine/arginine/ornithine transport system substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family	HEQRo_perm_3TM: amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein	0.958
DM42_1657	DM42_6453	DM42_1657	DM42_6453	Lysine/arginine/ornithine transport system substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family	HEQRo_perm_3TM: amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein	0.963
DM42_1657	DM42_6454	DM42_1657	DM42_6454	Lysine/arginine/ornithine transport system substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family	HEQRo_perm_3TM: amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein	0.958
DM42_1657	DM42_6455	DM42_1657	DM42_6455	Lysine/arginine/ornithine transport system substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family	annotation not available	0.950
DM42_1657	hisM	DM42_1657	DM42_2669	Lysine/arginine/ornithine transport system substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family	HEQRo_perm_3TM: amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein	0.958
DM42_1657	hisQ	DM42_1657	DM42_2670	Lysine/arginine/ornithine transport system substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family	HEQRo_perm_3TM: amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein	0.963
DM42_1657	hisQ_6	DM42_1657	DM42_547	Lysine/arginine/ornithine transport system substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family	HEQRo_perm_3TM: amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein	0.963
DM42_4325	DM42_1657	DM42_4325	DM42_1657	annotation not available	Lysine/arginine/ornithine transport system substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family	0.950
DM42_4325	DM42_4326	DM42_4325	DM42_4326	annotation not available	HEQRo_perm_3TM: amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein	0.990
DM42_4325	DM42_4327	DM42_4325	DM42_4327	annotation not available	HEQRo_perm_3TM: amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein	0.991
DM42_4325	DM42_546	DM42_4325	DM42_546	annotation not available	HEQRo_perm_3TM: amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein	0.964
DM42_4325	DM42_6453	DM42_4325	DM42_6453	annotation not available	HEQRo_perm_3TM: amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein	0.967
DM42_4325	DM42_6454	DM42_4325	DM42_6454	annotation not available	HEQRo_perm_3TM: amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein	0.964
DM42_4325	hisM	DM42_4325	DM42_2669	annotation not available	HEQRo_perm_3TM: amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein	0.964
DM42_4325	hisQ	DM42_4325	DM42_2670	annotation not available	HEQRo_perm_3TM: amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein	0.967
DM42_4325	hisQ_6	DM42_4325	DM42_547	annotation not available	HEQRo_perm_3TM: amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein	0.967
DM42_4326	DM42_1657	DM42_4326	DM42_1657	HEQRo_perm_3TM: amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein	Lysine/arginine/ornithine transport system substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family	0.958

page 1 of 5

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2021

Credits

Access

Info

About