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STRINGSTRING
DM42_169 protein (Burkholderia cepacia) - STRING interaction network
"DM42_169" - Conserved hypothetical protein in Burkholderia cepacia
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_169Conserved hypothetical protein (109 aa)    
Predicted Functional Partners:
DM42_168
annotation not available (603 aa)
 
          0.948
DM42_170
annotation not available (275 aa)
 
          0.924
DM42_174
annotation not available (412 aa)
 
          0.851
WI67_07580
annotation not available (463 aa)
 
          0.842
DM42_172
annotation not available (326 aa)
 
          0.818
DM42_179
annotation not available (164 aa)
 
          0.797
DM42_171
annotation not available (332 aa)
 
          0.783
WL94_27970
Uncharacterized protein (235 aa)
 
          0.742
DM42_178
annotation not available (164 aa)
 
          0.738
DM42_7262
Conserved hypothetical protein (92 aa)
   
          0.719
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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