STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WI67_00425annotation not available (136 aa)    
Predicted Functional Partners:
WI67_00390
annotation not available
 
     0.880
WL94_03775
General secretion pathway protein GspJ; IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain protein
 
     0.873
gspL
typeII_sec_gspL: type II secretion system protein L
 
     0.862
gspH
typeII_sec_gspH: type II secretion system protein H
 
   
 0.855
WL94_03795
annotation not available
 
     0.851
DM42_1725
annotation not available
 
     0.803
DM42_3108
annotation not available
  
     0.776
WL94_31950
Uncharacterized protein
  
     0.774
WI67_14160
annotation not available
  
     0.773
WI67_21520
Uncharacterized protein
  
     0.768
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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