STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_1728annotation not available (262 aa)    
Predicted Functional Partners:
DM42_1724
General secretion pathway protein GspJ; IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain protein
 
   
 0.951
epsM
annotation not available
 
     0.947
gspL
General secretion pathway protein l; typeII_sec_gspL: type II secretion system protein L
 
     0.945
DM42_1725
annotation not available
 
     0.942
gspI
General secretion pathway protein i; gspI: type II secretion system protein I
 
   
 0.939
gspH
General secretion pathway protein h; typeII_sec_gspH: type II secretion system protein H
 
   
 0.928
DM42_1720
annotation not available
 
     0.851
gspD
General secretion pathway protein d; type_II_gspD: type II secretion system protein D
 
     0.753
DM42_3073
Hypothetical protein; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins
  
     0.745
DM42_760
annotation not available
  
     0.743
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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