STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
emrBDrug resistance mfs transporter, drug:h+ antiporter-2 family protein; Belongs to the major facilitator superfamily (520 aa)    
Predicted Functional Partners:
DM42_193
annotation not available
 
 
 0.870
DM42_5656
Membrane fusion protein, multidrug efflux system; Hemolysin secretion protein D; RND_mfp: efflux transporter, RND family, MFP subunit
 
 
 0.868
DM42_4296
Membrane fusion protein, multidrug efflux system; RND_mfp: efflux transporter, RND family, MFP subunit
 
 
 0.826
DM42_4956
Membrane fusion protein, multidrug efflux system; RND_mfp: efflux transporter, RND family, MFP subunit
 
 
 0.823
DM42_7234
Membrane fusion protein, multidrug efflux system; RND_mfp: efflux transporter, RND family, MFP subunit
 
 
 0.816
DM42_4152
Membrane fusion protein, multidrug efflux system; Multidrug ABC transporter permease; RND_mfp: efflux transporter, RND family, MFP subunit
 
 
 0.795
DM42_7037
Membrane fusion protein, multidrug efflux system; RND_mfp: efflux transporter, RND family, MFP subunit
 
 
 0.772
DM42_1731
annotation not available
 
 
 
 0.657
DM42_1733
annotation not available
       0.578
acrA
annotation not available
   
 
 0.550
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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