fliM protein (Burkholderia cepacia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

fliM

fliM_switch- flagellar motor switch protein FliM (332 aa)

Predicted Functional Partners:

fliN

0.999

flgJ

0.999

fliG

0.999

fliP

0.997

fliQ

0.997

fliF

0.995

WI67_00340

0.995

fliO

0.994

flgK

0.993

flgB

0.990

Your Current Organism:

Burkholderia cepacia

NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
WI67_00340	flgB	DM42_1737	DM42_1984	Flagellar protein FliL; Controls the rotational direction of flagella during chemotaxis	Flagellar basal body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body	0.979
WI67_00340	flgJ	DM42_1737	DM42_1992	Flagellar protein FliL; Controls the rotational direction of flagella during chemotaxis	flagell_FlgJ- flagellar rod assembly protein/muramidase FlgJ	0.999
WI67_00340	flgK	DM42_1737	DM42_1994	Flagellar protein FliL; Controls the rotational direction of flagella during chemotaxis	flgK_ends- flagellar hook-associated protein FlgK	0.990
WI67_00340	fliF	DM42_1737	DM42_1945	Flagellar protein FliL; Controls the rotational direction of flagella during chemotaxis	Flagellar M-ring protein; The M ring may be actively involved in energy transduction	0.975
WI67_00340	fliG	DM42_1737	DM42_1944	Flagellar protein FliL; Controls the rotational direction of flagella during chemotaxis	fliG- flagellar motor switch protein FliG	0.971
WI67_00340	fliM	DM42_1737	DM42_1738	Flagellar protein FliL; Controls the rotational direction of flagella during chemotaxis	fliM_switch- flagellar motor switch protein FliM	0.995
WI67_00340	fliN	DM42_1737	DM42_1739	Flagellar protein FliL; Controls the rotational direction of flagella during chemotaxis	fliN- flagellar motor switch protein FliN	0.984
WI67_00340	fliO	DM42_1737	DM42_1740	Flagellar protein FliL; Controls the rotational direction of flagella during chemotaxis	fliO_TIGR- flagellar biosynthetic protein FliO	0.989
WI67_00340	fliP	DM42_1737	DM42_1741	Flagellar protein FliL; Controls the rotational direction of flagella during chemotaxis	Flagellar biosynthetic protein FliP; Plays a role in the flagellum-specific transport system	0.931
WI67_00340	fliQ	DM42_1737	DM42_1742	Flagellar protein FliL; Controls the rotational direction of flagella during chemotaxis	Flagellar biosynthetic protein FliQ; Role in flagellar biosynthesis	0.935
flgB	WI67_00340	DM42_1984	DM42_1737	Flagellar basal body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body	Flagellar protein FliL; Controls the rotational direction of flagella during chemotaxis	0.979
flgB	flgJ	DM42_1984	DM42_1992	Flagellar basal body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body	flagell_FlgJ- flagellar rod assembly protein/muramidase FlgJ	0.999
flgB	flgK	DM42_1984	DM42_1994	Flagellar basal body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body	flgK_ends- flagellar hook-associated protein FlgK	0.999
flgB	fliF	DM42_1984	DM42_1945	Flagellar basal body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body	Flagellar M-ring protein; The M ring may be actively involved in energy transduction	0.982
flgB	fliG	DM42_1984	DM42_1944	Flagellar basal body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body	fliG- flagellar motor switch protein FliG	0.985
flgB	fliM	DM42_1984	DM42_1738	Flagellar basal body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body	fliM_switch- flagellar motor switch protein FliM	0.990
flgB	fliN	DM42_1984	DM42_1739	Flagellar basal body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body	fliN- flagellar motor switch protein FliN	0.964
flgB	fliO	DM42_1984	DM42_1740	Flagellar basal body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body	fliO_TIGR- flagellar biosynthetic protein FliO	0.922
flgB	fliP	DM42_1984	DM42_1741	Flagellar basal body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body	Flagellar biosynthetic protein FliP; Plays a role in the flagellum-specific transport system	0.940
flgB	fliQ	DM42_1984	DM42_1742	Flagellar basal body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body	Flagellar biosynthetic protein FliQ; Role in flagellar biosynthesis	0.888

page 1 of 6

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2019

Credits

Access

Info

About