STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_1745annotation not available (265 aa)    
Predicted Functional Partners:
DM42_1746
annotation not available
  
 0.932
DM42_1744
annotation not available
 
  
 0.922
DM42_1747
annotation not available
 
     0.617
DM42_3118
annotation not available
  
 0.484
DM42_4536
annotation not available
  
 0.484
DM42_1748
Two-component system, ompr family, response regulator tctd; Two-component system response regulator; Transcriptional regulatory , C terminal family protein
  
    0.465
DM42_3966
annotation not available
  
 0.443
DM42_3967
annotation not available
  
 0.428
DM42_3965
annotation not available
 
  
 0.417
DM42_1750
Hypothetical protein; Porin; OMP85_target: outer membrane insertion C-terminal signal domain protein
 
     0.416
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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