WI67_00230 protein (Burkholderia cepacia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

WI67_00230

Porin; OMP85_target- outer membrane insertion C-terminal signal domain protein (375 aa)

Predicted Functional Partners:

DM42_5271

0.730

WL94_21680

0.711

WL94_06205

0.634

WL94_25550

0.632

WL94_05240

0.612

WL94_03885

0.587

WL94_26220

0.581

DM42_5537

0.569

WL94_02865

0.562

WL94_06810

0.557

Your Current Organism:

Burkholderia cepacia

NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DM42_5271	WI67_00230	DM42_5271	DM42_1750	Conserved hypothetical protein	Porin; OMP85_target- outer membrane insertion C-terminal signal domain protein	0.730
DM42_5271	WL94_05240	DM42_5271	DM42_6213	Conserved hypothetical protein	annotation not available	0.493
DM42_5271	WL94_06205	DM42_5271	DM42_3517	Conserved hypothetical protein	annotation not available	0.411
DM42_5271	WL94_21680	DM42_5271	DM42_1076	Conserved hypothetical protein	DUF4440 domain-containing protein	0.675
DM42_5271	WL94_25550	DM42_5271	DM42_5299	Conserved hypothetical protein	annotation not available	0.480
DM42_5537	WI67_00230	DM42_5537	DM42_1750	annotation not available	Porin; OMP85_target- outer membrane insertion C-terminal signal domain protein	0.569
DM42_5537	WL94_02865	DM42_5537	DM42_1516	annotation not available	Uncharacterized protein	0.725
DM42_5537	WL94_26220	DM42_5537	DM42_4081	annotation not available	annotation not available	0.780
WI67_00230	DM42_5271	DM42_1750	DM42_5271	Porin; OMP85_target- outer membrane insertion C-terminal signal domain protein	Conserved hypothetical protein	0.730
WI67_00230	DM42_5537	DM42_1750	DM42_5537	Porin; OMP85_target- outer membrane insertion C-terminal signal domain protein	annotation not available	0.569
WI67_00230	WL94_02865	DM42_1750	DM42_1516	Porin; OMP85_target- outer membrane insertion C-terminal signal domain protein	Uncharacterized protein	0.562
WI67_00230	WL94_03885	DM42_1750	DM42_1747	Porin; OMP85_target- outer membrane insertion C-terminal signal domain protein	annotation not available	0.587
WI67_00230	WL94_05240	DM42_1750	DM42_6213	Porin; OMP85_target- outer membrane insertion C-terminal signal domain protein	annotation not available	0.612
WI67_00230	WL94_06205	DM42_1750	DM42_3517	Porin; OMP85_target- outer membrane insertion C-terminal signal domain protein	annotation not available	0.634
WI67_00230	WL94_06810	DM42_1750	DM42_5067	Porin; OMP85_target- outer membrane insertion C-terminal signal domain protein	annotation not available	0.557
WI67_00230	WL94_21680	DM42_1750	DM42_1076	Porin; OMP85_target- outer membrane insertion C-terminal signal domain protein	DUF4440 domain-containing protein	0.711
WI67_00230	WL94_25550	DM42_1750	DM42_5299	Porin; OMP85_target- outer membrane insertion C-terminal signal domain protein	annotation not available	0.632
WI67_00230	WL94_26220	DM42_1750	DM42_4081	Porin; OMP85_target- outer membrane insertion C-terminal signal domain protein	annotation not available	0.581
WL94_02865	DM42_5537	DM42_1516	DM42_5537	Uncharacterized protein	annotation not available	0.725
WL94_02865	WI67_00230	DM42_1516	DM42_1750	Uncharacterized protein	Porin; OMP85_target- outer membrane insertion C-terminal signal domain protein	0.562

page 1 of 3

Network

Neighborhood

Experiments

Cooccurrence

Databases

Fusion

Textmining

Coexpression

© STRING Consortium 2019

Credits

Access

Info

About