STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gshABelongs to the glutamate--cysteine ligase type 1 family. Type 1 subfamily (533 aa)    
Predicted Functional Partners:
gshB
Glut_syn: glutathione synthase
 
  
 0.964
DM42_1349
annotation not available
     
 0.905
pepN
pepN_proteo: aminopeptidase N
     
 0.905
pepA
Leucyl aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides
   
 
  0.901
ilvE
Branched-chain amino acid aminotransferase; Acts on leucine, isoleucine and valine
     
  0.900
DM42_5889
annotation not available
     
  0.900
MetC
Cysteine-s-conjugate beta-lyase; cysta_beta_ly_B: cystathionine beta-lyase
  
 
 0.825
DM42_4694
Cysteine-s-conjugate beta-lyase; cysta_beta_ly_B: cystathionine beta-lyase
  
 
 0.825
DM42_6484
annotation not available
  
 
 0.825
ybdK
Glutamate---cysteine ligase / carboxylate-amine ligase; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity
     
 0.814
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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