STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_1811annotation not available (462 aa)    
Predicted Functional Partners:
DM42_1812
annotation not available
 
 
 0.799
DM42_1813
phnU2: putative 2-aminoethylphosphonate ABC transporter, permease protein
 
     0.700
DM42_1815
phnS2: putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein
 
   
 0.594
DM42_1814
phnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily
 
     0.558
PhnW
2-aminoethylphosphonate-pyruvate transaminase; Involved in phosphonate degradation
 
 
 0.512
DM42_5599
soxA: sarcosine oxidase, alpha subunit; Belongs to the GcvT family
  
 
 0.459
DM42_5906
Glutamine synthetase, catalytic domain protein; Belongs to the glutamine synthetase family
 
  
 0.455
DM42_2016
Glutamine synthetase, catalytic domain protein; Belongs to the glutamine synthetase family
 
  
 0.431
puuA_3
Glutamine synthetase, catalytic domain protein; Belongs to the glutamine synthetase family
 
  
 0.425
phnW
2-aminoethylphosphonate aminotransferase family protein; Involved in phosphonate degradation
 
 
 0.422
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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