STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mrdAPenicillin-binding protein 2; Catalyzes cross-linking of the peptidoglycan cell wall (756 aa)    
Predicted Functional Partners:
mrdB
Rod shape determining protein roda; Peptidoglycan polymerase that is essential for cell wall elongation
 
 0.998
mreC
mreC: rod shape-determining protein MreC
 
 
 0.971
mreB_2
Rod shape-determining protein mreb and related proteins; mreB: cell shape determining , MreB/Mrl family protein
 
 0.939
DM42_2178
Serine-type d-ala-d-ala carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family
 
 
 0.897
ftsI
Cell division protein ftsi (penicillin-binding protein 3); Catalyzes cross-linking of the peptidoglycan cell wall at the division septum
 
0.873
DM42_3725
Cell division protein ftsi (penicillin-binding protein 3); Catalyzes cross-linking of the peptidoglycan cell wall at the division septum
 
0.867
mreB_1
Rod shape-determining protein mreb and related proteins; mreB: cell shape determining , MreB/Mrl family protein
 
 0.865
mreD
shape_MreD: rod shape-determining protein MreD
 
  
 0.846
rlmH
23S rRNA (pseudouridine1915-N3)-methyltransferase; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
 
  
 0.831
ftsW
Cell division protein ftsw; Peptidoglycan polymerase that is essential for cell division
 
 0.783
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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