STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mreDshape_MreD: rod shape-determining protein MreD (170 aa)    
Predicted Functional Partners:
mreC
mreC: rod shape-determining protein MreC
 
 
 0.982
mrdA
Penicillin-binding protein 2; Catalyzes cross-linking of the peptidoglycan cell wall
 
  
 0.846
mrdB
Rod shape determining protein roda; Peptidoglycan polymerase that is essential for cell wall elongation
  
  
 0.827
mreB_2
Rod shape-determining protein mreb and related proteins; mreB: cell shape determining , MreB/Mrl family protein
  
  
 0.789
DM42_2409
annotation not available
 
  
 0.730
DM42_1926
Uncharacterized protein
 
     0.705
holA
holA: DNA polymerase III, delta subunit
  
    0.679
DM42_3290
annotation not available
 
    0.662
DM42_3287
annotation not available
  
 
 0.660
ftsQ
Cell division ftsq family protein; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
  
   
 0.651
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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