WL94_22405 protein (Burkholderia cepacia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

WL94_22405

HAD-SF-IA-v3: HAD hydrolase, IA, variant 3 family protein (263 aa)

Predicted Functional Partners:

argB

0.898

WL94_22400

0.780

WI67_12060

0.590

WI67_16630

0.566

WL94_17930

0.485

WI67_11970

0.478

glmM

0.463

WI67_04295

0.463

WL94_22420

0.448

WI67_14605

0.446

Your Current Organism:

Burkholderia cepacia

NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
WI67_04295	WL94_22405	DM42_935	DM42_1915	annotation not available	HAD-SF-IA-v3: HAD hydrolase, IA, variant 3 family protein	0.463
WI67_11970	WI67_12060	DM42_2863	DM42_2844	Uncharacterized protein	Uncharacterized protein	0.719
WI67_11970	WI67_14605	DM42_2863	DM42_2342	Uncharacterized protein	annotation not available	0.453
WI67_11970	WI67_16630	DM42_2863	DM42_1888	Uncharacterized protein	Uncharacterized protein	0.402
WI67_11970	WL94_22405	DM42_2863	DM42_1915	Uncharacterized protein	HAD-SF-IA-v3: HAD hydrolase, IA, variant 3 family protein	0.478
WI67_12060	WI67_11970	DM42_2844	DM42_2863	Uncharacterized protein	Uncharacterized protein	0.719
WI67_12060	WI67_14605	DM42_2844	DM42_2342	Uncharacterized protein	annotation not available	0.633
WI67_12060	WI67_16630	DM42_2844	DM42_1888	Uncharacterized protein	Uncharacterized protein	0.610
WI67_12060	WL94_22405	DM42_2844	DM42_1915	Uncharacterized protein	HAD-SF-IA-v3: HAD hydrolase, IA, variant 3 family protein	0.590
WI67_14605	WI67_11970	DM42_2342	DM42_2863	annotation not available	Uncharacterized protein	0.453
WI67_14605	WI67_12060	DM42_2342	DM42_2844	annotation not available	Uncharacterized protein	0.633
WI67_14605	WI67_16630	DM42_2342	DM42_1888	annotation not available	Uncharacterized protein	0.675
WI67_14605	WL94_17930	DM42_2342	DM42_427	annotation not available	Uncharacterized protein	0.527
WI67_14605	WL94_22405	DM42_2342	DM42_1915	annotation not available	HAD-SF-IA-v3: HAD hydrolase, IA, variant 3 family protein	0.446
WI67_16630	WI67_11970	DM42_1888	DM42_2863	Uncharacterized protein	Uncharacterized protein	0.402
WI67_16630	WI67_12060	DM42_1888	DM42_2844	Uncharacterized protein	Uncharacterized protein	0.610
WI67_16630	WI67_14605	DM42_1888	DM42_2342	Uncharacterized protein	annotation not available	0.675
WI67_16630	WL94_17930	DM42_1888	DM42_427	Uncharacterized protein	Uncharacterized protein	0.422
WI67_16630	WL94_22405	DM42_1888	DM42_1915	Uncharacterized protein	HAD-SF-IA-v3: HAD hydrolase, IA, variant 3 family protein	0.566
WL94_17930	WI67_14605	DM42_427	DM42_2342	Uncharacterized protein	annotation not available	0.527

page 1 of 2

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Coexpression

Databases

Fusion

© STRING Consortium 2020

Credits

Access

Info

About