STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_1918annotation not available (476 aa)    
Predicted Functional Partners:
regA
annotation not available
 
 0.998
DM42_1917
annotation not available
       0.588
DM42_2271
annotation not available
 
 
 0.533
DM42_2197
annotation not available
  
   
 0.518
cyoA
cyoA: ubiquinol oxidase, subunit II
  
  
 0.454
DM42_1915
HAD-SF-IA-v3: HAD hydrolase, IA, variant 3 family protein
 
    0.448
phoR
Two-component system, ompr family, phosphate regulon sensor histidine kinase phor; PAS domain-containing sensor histidine kinase; phoR_proteo: phosphate regulon sensor kinase PhoR
  
 
 
 0.427
cyoC
cyoC: cytochrome o ubiquinol oxidase, subunit III
  
  
 0.423
DM42_5140
Phage integrase family protein; Belongs to the 'phage' integrase family
  
    0.408
DM42_7319
annotation not available
   
 
 0.403
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.