Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DM42_1923 | DM42_1924 | DM42_1923 | DM42_1924 | Hypothetical protein; Cobalamin synthesis cobW C-terminal domain protein | annotation not available | 0.618 |
DM42_1923 | DM42_1926 | DM42_1923 | DM42_1926 | Hypothetical protein; Cobalamin synthesis cobW C-terminal domain protein | Uncharacterized protein | 0.530 |
DM42_1923 | dapF | DM42_1923 | DM42_1927 | Hypothetical protein; Cobalamin synthesis cobW C-terminal domain protein | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan | 0.435 |
DM42_1923 | xerC | DM42_1923 | DM42_1925 | Hypothetical protein; Cobalamin synthesis cobW C-terminal domain protein | Integrase/recombinase xerc; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids | 0.572 |
DM42_1924 | DM42_1923 | DM42_1924 | DM42_1923 | annotation not available | Hypothetical protein; Cobalamin synthesis cobW C-terminal domain protein | 0.618 |
DM42_1924 | DM42_1926 | DM42_1924 | DM42_1926 | annotation not available | Uncharacterized protein | 0.742 |
DM42_1924 | dapF | DM42_1924 | DM42_1927 | annotation not available | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan | 0.584 |
DM42_1924 | gcvP | DM42_1924 | DM42_1634 | annotation not available | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein | 0.519 |
DM42_1924 | guaB | DM42_1924 | DM42_3107 | annotation not available | Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth | 0.561 |
DM42_1924 | htrB | DM42_1924 | DM42_1928 | annotation not available | annotation not available | 0.523 |
DM42_1924 | polA | DM42_1924 | DM42_4183 | annotation not available | In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity | 0.540 |
DM42_1924 | ribD | DM42_1924 | DM42_881 | annotation not available | Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate | 0.636 |
DM42_1924 | rlmL | DM42_1924 | DM42_1133 | annotation not available | Putative n6-adenine-specific dna methylase; Belongs to the methyltransferase superfamily | 0.739 |
DM42_1924 | xerC | DM42_1924 | DM42_1925 | annotation not available | Integrase/recombinase xerc; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids | 0.750 |
DM42_1926 | DM42_1923 | DM42_1926 | DM42_1923 | Uncharacterized protein | Hypothetical protein; Cobalamin synthesis cobW C-terminal domain protein | 0.530 |
DM42_1926 | DM42_1924 | DM42_1926 | DM42_1924 | Uncharacterized protein | annotation not available | 0.742 |
DM42_1926 | dapF | DM42_1926 | DM42_1927 | Uncharacterized protein | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan | 0.794 |
DM42_1926 | htrB | DM42_1926 | DM42_1928 | Uncharacterized protein | annotation not available | 0.588 |
DM42_1926 | xerC | DM42_1926 | DM42_1925 | Uncharacterized protein | Integrase/recombinase xerc; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids | 0.914 |
dapF | DM42_1923 | DM42_1927 | DM42_1923 | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan | Hypothetical protein; Cobalamin synthesis cobW C-terminal domain protein | 0.435 |
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