Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DM42_1924 | DM42_1926 | DM42_1924 | DM42_1926 | annotation not available | Uncharacterized protein | 0.742 |
DM42_1924 | dapF | DM42_1924 | DM42_1927 | annotation not available | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan | 0.584 |
DM42_1924 | xerC | DM42_1924 | DM42_1925 | annotation not available | Integrase/recombinase xerc; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids | 0.750 |
DM42_1926 | DM42_1924 | DM42_1926 | DM42_1924 | Uncharacterized protein | annotation not available | 0.742 |
DM42_1926 | DM42_2230 | DM42_1926 | DM42_2230 | Uncharacterized protein | annotation not available | 0.675 |
DM42_1926 | DM42_2954 | DM42_1926 | DM42_2954 | Uncharacterized protein | Phasin (PHA-granule associated protein); Phasin: phasin family domain protein | 0.642 |
DM42_1926 | DM42_4090 | DM42_1926 | DM42_4090 | Uncharacterized protein | annotation not available | 0.676 |
DM42_1926 | DM42_4189 | DM42_1926 | DM42_4189 | Uncharacterized protein | annotation not available | 0.649 |
DM42_1926 | dapF | DM42_1926 | DM42_1927 | Uncharacterized protein | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan | 0.794 |
DM42_1926 | holA | DM42_1926 | DM42_1187 | Uncharacterized protein | holA: DNA polymerase III, delta subunit | 0.676 |
DM42_1926 | mreD | DM42_1926 | DM42_1899 | Uncharacterized protein | shape_MreD: rod shape-determining protein MreD | 0.705 |
DM42_1926 | xerC | DM42_1926 | DM42_1925 | Uncharacterized protein | Integrase/recombinase xerc; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids | 0.914 |
DM42_1926 | zapA | DM42_1926 | DM42_2611 | Uncharacterized protein | Cell division zapa family protein; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division | 0.630 |
DM42_2230 | DM42_1926 | DM42_2230 | DM42_1926 | annotation not available | Uncharacterized protein | 0.675 |
DM42_2230 | DM42_4090 | DM42_2230 | DM42_4090 | annotation not available | annotation not available | 0.400 |
DM42_2230 | DM42_4189 | DM42_2230 | DM42_4189 | annotation not available | annotation not available | 0.454 |
DM42_2954 | DM42_1926 | DM42_2954 | DM42_1926 | Phasin (PHA-granule associated protein); Phasin: phasin family domain protein | Uncharacterized protein | 0.642 |
DM42_2954 | DM42_4189 | DM42_2954 | DM42_4189 | Phasin (PHA-granule associated protein); Phasin: phasin family domain protein | annotation not available | 0.754 |
DM42_2954 | mreD | DM42_2954 | DM42_1899 | Phasin (PHA-granule associated protein); Phasin: phasin family domain protein | shape_MreD: rod shape-determining protein MreD | 0.514 |
DM42_4090 | DM42_1926 | DM42_4090 | DM42_1926 | annotation not available | Uncharacterized protein | 0.676 |
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