WI67_16380 protein (Burkholderia cepacia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

WI67_16380

Uncharacterized protein (70 aa)

Predicted Functional Partners:

WI67_07380

0.784

DM42_6288

0.782

WL94_28705

0.782

WI67_27440

0.781

WI67_24145

0.781

WL94_13140

0.780

WI67_16390

0.780

WI67_29265

0.778

DM42_7268

0.775

WI67_15045

0.775

Your Current Organism:

Burkholderia cepacia

NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DM42_6288	WI67_07380	DM42_6288	DM42_211	Conserved hypothetical protein	DNA-binding protein	0.777
DM42_6288	WI67_15045	DM42_6288	DM42_2256	Conserved hypothetical protein	annotation not available	0.737
DM42_6288	WI67_16380	DM42_6288	DM42_1936	Conserved hypothetical protein	Uncharacterized protein	0.782
DM42_6288	WI67_16390	DM42_6288	DM42_1934	Conserved hypothetical protein	annotation not available	0.757
DM42_6288	WL94_28705	DM42_6288	DM42_103	Conserved hypothetical protein	Uncharacterized protein	0.781
DM42_7268	WI67_07380	DM42_7268	DM42_211	Conserved hypothetical protein	DNA-binding protein	0.776
DM42_7268	WI67_15045	DM42_7268	DM42_2256	Conserved hypothetical protein	annotation not available	0.737
DM42_7268	WI67_16380	DM42_7268	DM42_1936	Conserved hypothetical protein	Uncharacterized protein	0.775
DM42_7268	WI67_16390	DM42_7268	DM42_1934	Conserved hypothetical protein	annotation not available	0.720
DM42_7268	WL94_28705	DM42_7268	DM42_103	Conserved hypothetical protein	Uncharacterized protein	0.774
WI67_07380	DM42_6288	DM42_211	DM42_6288	DNA-binding protein	Conserved hypothetical protein	0.777
WI67_07380	DM42_7268	DM42_211	DM42_7268	DNA-binding protein	Conserved hypothetical protein	0.776
WI67_07380	WI67_15045	DM42_211	DM42_2256	DNA-binding protein	annotation not available	0.778
WI67_07380	WI67_16380	DM42_211	DM42_1936	DNA-binding protein	Uncharacterized protein	0.784
WI67_07380	WI67_16390	DM42_211	DM42_1934	DNA-binding protein	annotation not available	0.783
WI67_07380	WI67_24145	DM42_211	DM42_3598	DNA-binding protein	Uncharacterized protein	0.781
WI67_07380	WI67_27440	DM42_211	DM42_6075	DNA-binding protein	Uncharacterized protein	0.776
WI67_07380	WI67_29265	DM42_211	DM42_5702	DNA-binding protein	Purine-nucleoside phosphorylase	0.764
WI67_07380	WL94_13140	DM42_211	DM42_7393	DNA-binding protein	Purine-nucleoside phosphorylase	0.776
WI67_07380	WL94_28705	DM42_211	DM42_103	DNA-binding protein	Uncharacterized protein	0.781

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