STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fliIfliI_clade1: flagellar protein export ATPase FliI (514 aa)    
Predicted Functional Partners:
fliG
fliG: flagellar motor switch protein FliG
 
 0.997
fliF
Flagellar m-ring protein flif; The M ring may be actively involved in energy transduction
 
  
 0.995
flgJ
flagell_FlgJ: flagellar rod assembly protein/muramidase FlgJ
 
 
 0.993
fliH
annotation not available
 
 0.991
fliJ
flagell_FliJ: flagellar export protein FliJ
 
 
 0.984
flgK
flgK_ends: flagellar hook-associated protein FlgK
 
  
 0.977
fliN
fliN: flagellar motor switch protein FliN
 
 
 0.975
fliM
fliM_switch: flagellar motor switch protein FliM
 
  
 0.964
DM42_1940
annotation not available
 
  
 0.962
flgG
Flagellar basal-body rod protein flgf; Belongs to the flagella basal body rod proteins family
 
  
 0.958
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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