STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fliSFlagellar secretion chaperone flis; fliS: flagellar protein FliS (144 aa)    
Predicted Functional Partners:
DM42_1587
Hypothetical protein; Bacterial flagellin C-terminal helical region family protein
 
 
 0.999
flgK
flgK_ends: flagellar hook-associated protein FlgK
 
 
 0.999
flgL
flagell_flgL: flagellar hook-associated protein 3
 
 
 0.997
fliF
Flagellar m-ring protein flif; The M ring may be actively involved in energy transduction
 
  
 0.990
fliG
fliG: flagellar motor switch protein FliG
 
  
 0.985
flgJ
flagell_FlgJ: flagellar rod assembly protein/muramidase FlgJ
 
 
 0.985
flgM
Negative regulator of flagellin synthesis flgm; flgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM
  
 
 0.983
fliM
fliM_switch: flagellar motor switch protein FliM
 
  
 0.980
flgG
Flagellar basal-body rod protein flgf; Belongs to the flagella basal body rod proteins family
 
  
 0.974
DM42_6578
annotation not available
 
 
 0.972
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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