STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_1949annotation not available (450 aa)    
Predicted Functional Partners:
flgJ
flagell_FlgJ: flagellar rod assembly protein/muramidase FlgJ
 
  
 0.999
flgK
flgK_ends: flagellar hook-associated protein FlgK
 
 
 0.981
flhB_1
annotation not available
 
   
 0.955
fliJ
flagell_FliJ: flagellar export protein FliJ
 
  
 0.935
flgD
Flagellar basal-body rod modification protein flgd; Required for flagellar hook formation. May act as a scaffolding protein
 
 
 0.902
flgH
Flagellar l-ring family protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation
 
  
 0.884
flgA
flgA_cterm: flagella basal body P-ring formation protein FlgA
 
  
 0.873
fliO
fliO_TIGR: flagellar biosynthetic protein FliO
 
  
 0.870
fliH
annotation not available
 
  
 0.856
fliL
Flagellar basal body-associated flil family protein; Controls the rotational direction of flagella during chemotaxis
 
  
 0.851
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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