Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

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Experiments

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Textmining

[Homology]

Score

flgG

flgF- flagellar basal-body rod protein FlgF; Belongs to the flagella basal body rod proteins family (262 aa)

Predicted Functional Partners:

flgK

0.999

flgJ

0.999

WI67_16110

0.999

flgI

0.999

flgH

0.999

flgC

0.999

flgB

0.995

fliG

0.993

fliN

0.988

fliM

0.988

Your Current Organism:

Burkholderia cepacia

NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717

Export your current network:

... as a bitmap image:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but resolution at 400 dpi

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

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TSV: tab separated values - can be opened in Excel

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
WI67_16110	flgB	DM42_1986	DM42_1984	Basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein	Flagellar basal body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body	0.999
WI67_16110	flgC	DM42_1986	DM42_1985	Basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein	flgC- flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family	0.999
WI67_16110	flgG	DM42_1986	DM42_1989	Basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein	flgF- flagellar basal-body rod protein FlgF; Belongs to the flagella basal body rod proteins family	0.999
WI67_16110	flgH	DM42_1986	DM42_1990	Basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein	Flagellar L-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation	0.997
WI67_16110	flgI	DM42_1986	DM42_1991	Basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein	Flagellar P-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation	0.999
WI67_16110	flgJ	DM42_1986	DM42_1992	Basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein	flagell_FlgJ- flagellar rod assembly protein/muramidase FlgJ	0.999
WI67_16110	flgK	DM42_1986	DM42_1994	Basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein	flgK_ends- flagellar hook-associated protein FlgK	0.999
WI67_16110	fliG	DM42_1986	DM42_1944	Basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein	fliG- flagellar motor switch protein FliG	0.974
WI67_16110	fliM	DM42_1986	DM42_1738	Basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein	fliM_switch- flagellar motor switch protein FliM	0.975
WI67_16110	fliN	DM42_1986	DM42_1739	Basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein	fliN- flagellar motor switch protein FliN	0.975
flgB	WI67_16110	DM42_1984	DM42_1986	Flagellar basal body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body	Basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein	0.999
flgB	flgC	DM42_1984	DM42_1985	Flagellar basal body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body	flgC- flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family	0.999
flgB	flgG	DM42_1984	DM42_1989	Flagellar basal body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body	flgF- flagellar basal-body rod protein FlgF; Belongs to the flagella basal body rod proteins family	0.995
flgB	flgH	DM42_1984	DM42_1990	Flagellar basal body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body	Flagellar L-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation	0.996
flgB	flgI	DM42_1984	DM42_1991	Flagellar basal body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body	Flagellar P-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation	0.994
flgB	flgJ	DM42_1984	DM42_1992	Flagellar basal body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body	flagell_FlgJ- flagellar rod assembly protein/muramidase FlgJ	0.999
flgB	flgK	DM42_1984	DM42_1994	Flagellar basal body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body	flgK_ends- flagellar hook-associated protein FlgK	0.999
flgB	fliG	DM42_1984	DM42_1944	Flagellar basal body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body	fliG- flagellar motor switch protein FliG	0.985
flgB	fliM	DM42_1984	DM42_1738	Flagellar basal body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body	fliM_switch- flagellar motor switch protein FliM	0.990
flgB	fliN	DM42_1984	DM42_1739	Flagellar basal body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body	fliN- flagellar motor switch protein FliN	0.964

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